Getting StartedΒΆ

To install with pip:

$ pip install operon

Or to get the latest development version:

$ pip install git+https://github.com/djf604/operon@dev

Note

Parsl requires Python 3.5+, so Operon does too

Operon keeps track of pipelines and configurations automatically in a hidden directory. Before Operon can be used, this directory needs to be initialized with the command:

$ operon init

To install a pipeline:

$ operon install /path/to/pipeline.py

To configure the pipeline and optionally install software:

$ operon configure <pipeline-name>

To run the pipeline:

$ operon run <pipeline-name>