Getting StartedΒΆ
To install with pip:
$ pip install operon
Or to get the latest development version:
$ pip install git+https://github.com/djf604/operon@dev
Note
Parsl requires Python 3.5+, so Operon does too
Operon keeps track of pipelines and configurations automatically in a hidden directory. Before Operon can be used, this directory needs to be initialized with the command:
$ operon init
To install a pipeline:
$ operon install /path/to/pipeline.py
To configure the pipeline and optionally install software:
$ operon configure <pipeline-name>
To run the pipeline:
$ operon run <pipeline-name>