Changelog¶

v0.1.1 (released Jan 2018)¶

If the path= argument isn’t provided to a Software instance, the path will attempt to populate from pipeline_config[software_name]['path']
Added subprogram= argument to Software
Made tab completer program silent if it ever fails because it doesn’t exist

Better error messages when the pipeline developer doesn’t override a method properly
Better error messages when the pipeline configuration is malformed
Added parsl_config key to all pipeline configurations by default
Added > and 2> paths to the string representation of a Software’s command
Removed captured log output from screen; it still goes to the log file
Added tags marking start time, end time, and duration of pipeline run to the log output
Start and end time for each Software or CodeBlock added to log output
Added “currently running” log entry, whenever the set of running programs changes
Updated output for operon list
Updated output for operon show
When a conda environment already exists, added ability to reinstall
Added operon uninstall to remove pipelines
Refactored cleanup so that it always runs, even if some programs fail during the run