Operon Documentation

• Getting Started
• Using Operon
  • Initialization
  • Pipeline Installation
  • Pipeline Configuration
  • Seeing Pipeline States
  • Run a Pipeline
  • Run a Pipeline in Batch
  • Command Line Help
• Building Pipelines
  • Dependency Workflow Concepts
  • Pipeline Meta Definitions
  • Pipeline Logic
  • Pipeline Logging
• Developer Tutorial
  • description(self)
  • dependencies(self)
  • conda(self)
  • arguments(self, parser)
  • configuration(self)
  • pipeline(self, pipeline_args, pipeline_config)
  • Running the Tutorial Pipeline
• Operon API
• Changelog
  • v0.1.8 (released 29 August 2018)
  • v0.1.5 (released 7 June 2018)
  • v0.1.2 (released 21 Feb 2018)
  • v0.1.1 (released Jan 2018)

Parsl

Operon is powered by Parsl. To get an understanding of how to most efficiently run Operon pipelines, check out the Parsl documentation.